Phylogenetic diversity of plant communities can influence the interaction between plants, herbivores, and their natural enemies. Plant communities with phylogenetically distant species tend to present a wide variety of functional traits and ecological niches, which in turn can influence competitive ...
Author(s)
Alavez, V.; Santos-Gally, R.; Gutiérrez-Aguilar, M.; Del-Val, E.; Boege, K.
Publisher
Springer Berlin, Heidelberg, Germany
Citation
Oecologia, 2023, 203, 1/2, pp 125-137
This study aimed to compare the effects of SNP genotyping techniques (array and sequencing) and marker densities on the analysis results of genetic diversity, phylogenetic tree and genomic inbreeding coefficient, and explore low-cost and efficient genotyping method and appropriate SNP density in...
Author(s)
Yang Qing; Gong Jing; Zhao XueYan; Zhu XiaoDong; Geng LiYing; Zhang ChuanSheng; Wang JiYing
Publisher
Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, China
Citation
Acta Veterinaria et Zootechnica Sinica, 2023, 54, 7, pp 2772-2782
The genus Karyolysus was originally proposed to accommodate blood parasites of lacertid lizards in Western Europe. However, recent phylogenetic analyses suggested an inconclusive taxonomic position of these parasites of the order Adeleorina based on the available genetic information....
Author(s)
Megía-Palma, R.; Martínez, J.; Fitze, P. S.; Cuervo, J. J.; Belliure, J.; Jiménez-Robles, O.; Cabido, C.; Martín, J.; Merino, S.
Publisher
Elsevier Ltd, Oxford, UK
Citation
International Journal for Parasitology, 2023, 53, 8, pp 185-196
Sequence analysis of the canine distemper virus (CDV) hemagglutinin (H) gene may provide important insights on virus-host interactions and has also been frequently used for CDV phylogenetic classification. Herein, we performed an in silico analysis of CDV complete genomes (CGs) available in GenBank ...
Author(s)
Becker, A. S.; Silva Júnior, J. V. J.; Weiblen, R.; Flores, E. F.
Publisher
Elsevier B.V., Amsterdam, Netherlands
Citation
Virus Research, 2023, 325,
Objective: This work was aimed to establish a identification method of Aeromonas based on 16S rRNA sequence and gyrB gene tandem DNA characteristic sequence, and to provide research technical support for the differentiation of Aeromonas at the species level. Method: The aquatic bacteria, which were ...
Author(s)
Chen TianNan; Hu Kun
Publisher
Guangxi Academy of Agricultural Sciences, Nanning, China
Citation
Journal of Southern Agriculture, 2023, 54, 6, pp 1858-1867
Background: The feline immunodeficiency virus (FIV) is responsible for a retroviral disease that affects domestic and wild cats worldwide, causing Feline Acquired Immunodeficiency Syndrome (FAIDS). FIV is a lentivirus from the family Retroviridae and its genome has 3 main structural genes: gag, pol ...
Author(s)
Biondo, D.; Kipper, D.; Maciel, J. G.; Santana, W. de O.; Streck, A. F.; Lunge, V. R.
Publisher
Universidade Federal do Rio Grande do Sul, Faculdade de Veterinária, Porto Alegre, Brazil
Citation
Acta Scientiae Veterinariae, 2023, 51, 1910,
Piroplasmids (order Piroplasmida) are a diverse group of tick-borne protozoa that may cause disease in animals and occasionally in humans. Novel Piroplasmida clades and species have been found in wild animals from Brazil based on the phylogenetic assessment of near-complete 18S rRNA, mitochondrial...
Author(s)
Krawczak, F. da S.; Calchi, A. C.; Neves, L. C.; Dias, S. A.; Silva, B. B. F. da; Paula, W. V. de F.; Paula, L. G. F. de; Tavares, M. A.; Pádua, G. T.; Lima, N. J. de; Cardoso, E. R. N.; Graziani, D.; Dantas-Torres, F.; André, M. R.
Publisher
MDPI AG, Basel, Switzerland
Citation
Microorganisms, 2023, 11, 8,
This study aimed to identify the phylogenetic similarities among the muntjac (Muntiacus spp.). The phylogenetic similarities among seven major muntjac species were studied by comparing the nucleotide sequence of 16s rRNA and cytochrome b genome. Nucleotide sequences, retrieved from NCBI databases...
Author(s)
Khan, B. M.; Sabir, M.; Alyemeni, M. N.; Kaushik, P.; Saeed, M.; Raza, G.; Khan, K. A.; Habiba, U.
Publisher
Instituto Internacional de Ecologia, São Carlos, Brazil
Citation
Brazilian Journal of Biology, 2023, 83,
Modern "molecular genetic (MG) phylogenies" of the plague microbe Yersinia pestis, built on models of neutral evolution using statistical methods of phylogenetic analysis, contradict numerous obvious environmental (ECO) patterns and are not consistent with the concept of adaptatiogenesis. The...
Publisher
Pleiades Publishing, Moscow, Russia
Citation
Biology Bulletin, 2023, 50, 2, pp 103-109
In order to investigate the co-infection detection and phylogenetic analysis of porcine circovirus, a total of 10 samples with PCV-like syndrome were collected and detected by PCR. Positive samples were selected to whole genome cloning and sequencing analysis. The results showed that all samples...
Author(s)
Sun YingHui; Xia Ye; Chen PengFei; Miao DeNian
Publisher
Editorial Office of Acta Agriculturae Shanghai, Shanghai, China
Citation
Acta Agriculturae Shanghai, 2023, 39, 3, pp 67-72