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Abstract

We report genome characterization of three native Chinese cattle breeds discovering ∼34.3 M SNPs and ∼3.8 M InDels using whole genome resequencing. On average, 10.4 M SNPs were shared amongst the three cattle breeds, whereas, 3.0 M, 4.9 M and 5.8 M were specific to LQ, WN and WS breeds,...

Author(s)
Zhang FengWei; Qu KaiXing; Chen NingBo; Hanif, Q.; Jia YuTang; Huang YongZhen; Dang RuiHua; Zhang JiCai; Lan XianYong; Chen Hong; Huang BiZhi; Lei ChuZhao
Publisher
MDPI AG, Basel, Switzerland
Citation
Animals, 2019, 9, 9, pp 596
Abstract

The objective of this research was to characterize the genetic diversity and phylogenetic diversity among 12 cattle breeds (10 Chinese breeds and two foreign taurine breeds as controls) utilizing gene mtDNA 16S rRNA. The complete sequences of the mtDNA 16S rRNA genes of the 251 animals were 1570 bp ...

Author(s)
Yan LinJun; She YiFan; Elzo, M. A.; Zhang ChunLei; Fang XingTang; Chen Hong
Publisher
Copernicus Gesellschaft mbH, Gottingen, Germany
Citation
Archives Animal Breeding, 2019, 62, 1, pp 325-333
Abstract

Eukaryotic translation initiation factor 2-alpha kinase 4 (EIF2AK4, also known as GCN2), which pertains to the family of serine-threonine kinase, is involved in oxidative stress and DNA damage repair. A missense single-nucleotide polymorphism (SNP) (NC_037337.1 g.35615224 T > G) in exon 6 of the ...

Author(s)
Wang KaiYue; Cao YanHong; Rong Yu; Ning QingQing; Jia Peng; Huang YongZhen; Lan XianYong; Dang RuiHua; Chen Hong; Lei ChuZhao
Publisher
MDPI AG, Basel, Switzerland
Citation
Animals, 2019, 9, 6, pp 375
Abstract

To determine the Y chromosome genetic diversity and paternal origin of Chinese cattle, 369 bulls from 17 Chinese native cattle breeds and 30 bulls from Holstein and four bulls from Burma were analyzed using a recently discovered USP9Y marker that could distinguish between taurine and indicine ...

Author(s)
Li Ran; Xie WenMei; Chang ZhenHua; Wang ShaoQiang; Dang RuiHua; Lan XianYong; Chen Hong; Lei ChuZhao
Publisher
Springer, Amsterdam, Netherlands
Citation
Molecular Biology Reports, 2013, 40, 12, pp 6633-6636
Abstract

The Mongolian cattle are one of the most widespread breeds with strictly Bos taurus morphological features in northern China. In our current study, we presented a diversity of mitochondrial DNA (mtDNA) D-loop region and Y chromosome SNP markers in 25 male and 8 female samples of Mongolian cattle...

Author(s)
Yue XiangPeng; Li Ran; Liu, L.; Zhang YunSheng; Huang JiePing; Chang ZhenHua; Dang RuiHua; Lan XianYong; Chen Hong; Lei ChuZhao
Publisher
Elsevier Ltd, Oxford, UK
Citation
Gene, 2014, 537, 2, pp 214-219
Abstract

Whole-genome sequencing provides a powerful tool to obtain more genetic variability that could produce a range of benefits for cattle breeding industry. Nanyang (Bos indicus) and Qinchuan (Bos taurus) are two important Chinese indigenous cattle breeds with distinct phenotypes. To identify the...

Author(s)
Xu Yao; Jiang Yu; Shi Tao; Cai HanFang; Lan XianYong; Zhao Xin; Plath, M.; Chen Hong
Publisher
Public Library of Sciences (PLoS), San Francisco, USA
Citation
PLoS ONE, 2017, 12, 8, pp e0183921
Abstract

The genetic diversity and evolutionary origin of yellow cattle landraces has always been one of the research focuses for animal geneticist both at home and abroad. In this research, we summarize the genetic diversity and evolutionary origin of yellow cattle landraces in China from two aspects of...

Author(s)
Zhang RunFeng; Li XiaoFeng; Chen Hong
Publisher
Guangxi University, Guangxi, China
Citation
Genomics and Applied Biology, 2009, 28, 5, pp 1032-1038
Abstract

Complete mitochondrial D-loop sequences of 140 samples obtained from 15 Chinese local cattle breeds were analyzed. The result showed 67 different haplotypes with 113 polymorphic sites. The haplotype diversity and nucleotide diversity were 0.608-1.000 and 0.002-0.028, respectively, indicating...

Author(s)
Fang XingTang; Zhou Yan; Chen Hong; Cai Xin; Fang NanZhu
Publisher
Science Press, Beijing, China
Citation
Acta Zoologica Sinica, 2007, 53, 5, pp 928-933
Abstract

The complete mitochondrial D-loop sequences, 910 bp in length, in 82 individual cattle from 4 breeds in Guizhou province, China, were analysed. The results revealed 31 mitochondrial haplotypes and 65 polymorphic sites, covering 7.14% of the entire length of the sequence. Among these polymorphic...

Author(s)
Liu RuoYu; Xia XianLin; Lei ChuZhao; Zhang MingZhong; Chen Hong; Yang GongShe
Publisher
Editorial Office of Hereditas (Beijing), Beijing, China
Citation
Hereditas (Beijing), 2006, 28, 3, pp 279-284
Abstract

In order to clarify the origin and genetic diversity of indigenous cattle breeds in China, we carried out phylogenetic analysis of representatives of those breeds by employing mitochondrial gene polymorphism. Complete cyt b gene sequences, 1140 bp in length, were determined for a total of 136...

Author(s)
Cai Xin; Chen Hong; Lei ChuZhao; Wang Shan; Xue Kai; Zhang Bao
Publisher
Springer Science + Business Media, Dordrecht, Netherlands
Citation
Genetica, 2007, 131, 2, pp 175-183

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