Invasive Species Compendium

Detailed coverage of invasive species threatening livelihoods and the environment worldwide

Abstract

In silico finding of three-dimensional structure of at5g01610 Arabidopsis thaliana by homology modelling.

Abstract

Arabidopsis thaliana is also known as rockcress or thale cress, is an Magnoliophyta, a dicot from the mustard family (Brassicaceae), which includes cultivated species such as cabbage and radish, often considered to be a weed plant. Threedimensional structure of Arabidopsis thaliana At5g01610 hypothetical protein was found by using the MODELLER software. After executing MODELLER, the final model is selected on the basis of least DOPE score value, which is then furthermore statistically visualized by applying PROCHECK and give rise to Ramachandran plot. Among all the residues, 81.2% residues are present in most favoured regions, 12.8% residues in additionally allowed region and 3.4% and 2.7% residues are present in generously allowed regions and disallowed regions, respectively.