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Animal Science Database

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Abstract

Motivation: Evolutionary conservation of DNA sequences provides a tool for the identification of functional elements in genomes. We have created a database of evolutionary conserved regions (ECRs) in vertebrate genomes, entitled ECRbase, which is constructed from a collection of whole-genome...

Author(s)
Loots, G.; Ovcharenko, I.
Publisher
Oxford University Press, Oxford, UK
Citation
Bioinformatics, 2007, 23, 1, pp 122-124
Abstract

The nucleotide sequences of the promoters of 9 rat MHC class I genes, from the 2 regions of the rat genome containing genes of this type, were analysed and compared with the sequences of mouse H2 loci. A purine-rich 44-bp segment, an element resembling the consensus sequence of heat shock proteins, ...

Author(s)
Lambracht-Washington, D.; Lindahl, K. F.; Wonigeit, K.
Citation
Immunogenetics, 2000, 51, 10, pp 873-877
Abstract

The 5′ regions of the SRY genes from 10 mammalian species, including sheep, rat, guineapig and mouse, were sequenced and compared. Ten conserved regulatory elements (AP1, Barbie, GATA, Gfi1, cMYb, vMyb, NF1, Oct1, Sp1 and SRY) were present in all 10 species. The positions of these elements were not ...

Author(s)
Margarit, E.; Guillén, A.; Rebordosa, C.; Vidal-Taboada, J.; Sánchez, M.; Ballesta, F.; Oliva, R.
Citation
Biochemical and Biophysical Research Communications, 1998, 245, 2, pp 370-377
Abstract

Clones were isolated from rat liver and human lung fibroblast genomic libraries, using a prohibitin intron probe, and sequenced. Comparative analysis of a 350-bp region immediately 5′ to and including the 1st exon identified 8 highly conserved regions, 4 of which corresponded to binding sites for...

Author(s)
Altus, M. S; Wood, C. M.; Stewart, D. A.; Roskams, A. J. I.; Friedman, V.; Henderson, T.; Owens, G. A.; Danner, D. B.; Jupe, E. R.; Dell'Orco, R. T.; McClung, J. K.
Citation
Gene, 1995, 158, 2, pp 291-294

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