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Abstract

Transposable elements (TEs) are genomic sequences that can move, multiply, and often form sizable fractions of vertebrate genomes. Fish belong to a unique group of vertebrates, since their karyotypes and genome sizes are more diverse and complex, with probably higher diversity and evolution...

Author(s)
Shao Feng; Han MinJin; Peng ZuoGang
Publisher
Nature Publishing Group, London, UK
Citation
Scientific Reports, 2019, 9, 10, pp 15399
Abstract

Teleost genomes encode multiple multigene families of immunoglobulin domain-containing innate immune receptors (IIIRs) with unknown function and no clear mammalian orthologs. However, the genomic organization of IIIR gene clusters and the structure and signaling motifs of the proteins they encode...

Author(s)
Wcisel, D. J.; Yoder, J. A.
Publisher
Elsevier Ltd, Oxford, UK
Citation
Fish & Shellfish Immunology, 2016, 53, pp 24-34
Abstract

Background: Common carp (Cyprinus carpio) is thought to have undergone one extra round of genome duplication compared to zebrafish. Transcriptome analysis has been used to study the existence and timing of genome duplication in species for which genome sequences are incomplete. Large-scale...

Author(s)
Wang JinTu; Li JiongTang; Zhang XiaoFeng; Sun XiaoWen
Publisher
BioMed Central Ltd, London, UK
Citation
BMC Genomics, 2012, 13, 96, pp (19 March 2012)
Abstract

This issue contains 12 papers focusing on the role that various RNAs play in plant and animal development. The fundamental mechanisms of RNA localization shared among many species are also discussed.

Publisher
Wiley-Blackwell, Melbourne, Australia
Citation
Development, Growth & Differentiation, 2012, 54, 1, pp 1-141
Abstract

The zebrafish genome contains a large number of genes encoding potential cytokine receptor genes as judged by homology to mammalian receptors. The sequences are too divergent to allow unambiguous assignments of all receptors to specific cytokines, and only a few have been assigned functions by...

Author(s)
Aggad, D.; Stein, C.; Sieger, D.; Mazel, M.; Boudinot, P.; Herbomel, P.; Levraud, J. P.; Lutfalla, G.; Leptin, M.
Publisher
American Association of Immunologists, Bethesda, USA
Citation
Journal of Immunology, 2010, 185, 11, pp 6774-6782
Abstract

The impact of the genome sequence for fish species for which it is already available is reviewed. How the combination of genomics with more traditional disciplines may pave the way for a wider impact on biology is examined. The use of fish genomic sequence as a model of other vertebrate genomes is...

Author(s)
Crollius, H. R.; Weissenbach, J.
Publisher
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, USA
Citation
Genome Research, 2005, 15, 12, pp 1675-1682
Abstract

Whole genome duplications (WGDs) are considered to have been a driving force in the generation of evolutionary diversity that is characteristic of higher eukaryotes. The ancestor of salmonids underwent two additional WGDs compared to mammals, one (3R) at the base of the teleost radiation and...

Author(s)
Lai, Y. Y. Y.; Lubieniecki, K. P.; Koop, B. F.; Davidson, W. S.
Publisher
Elsevier Ltd, Oxford, UK
Citation
Gene, 2012, 504, 2, pp 253-261
Abstract

Background: Rainbow trout is an economically important fish and a suitable experimental organism in many fields of biology including genome evolution, owing to the occurrence of a salmonid specific whole-genome duplication (4th WGD). Rainbow trout is among some of the most studied teleosts and has...

Author(s)
Guyomard, R.; Boussaha, M.; Krieg, F.; Hervet, C.; Quillet, E.
Publisher
BioMed Central Ltd, London, UK
Citation
BMC Genetics, 2012, 13, 15, pp (16 March 2012)
Abstract

Motivation: Evolutionary conservation of DNA sequences provides a tool for the identification of functional elements in genomes. We have created a database of evolutionary conserved regions (ECRs) in vertebrate genomes, entitled ECRbase, which is constructed from a collection of whole-genome...

Author(s)
Loots, G.; Ovcharenko, I.
Publisher
Oxford University Press, Oxford, UK
Citation
Bioinformatics, 2007, 23, 1, pp 122-124
Abstract

Receptors that recognize conserved pathogen molecules are the first line of cellular innate immunity defense. Toll-like receptors (TLRs) are the best understood of the innate immune receptors that detect infections in mammals. Key features of the fish TLRs and the factors involved in their...

Author(s)
Palti, Y.
Publisher
Elsevier Ltd, Oxford, UK
Citation
Developmental and Comparative Immunology, 2011, 35, 12, pp 1263-1272

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