| Bacteria | | Proteobacteria | citrus huanglongbing (greening) disease (citrus greening) | Present | | | Aubert et al., 1985 |
| Bacteria | | Proteobacteria | Liberibacter asiaticus (Asian greening) | Present | | | CABI/EPPO, 2006; EPPO, 2014 |
| Bacteria | | Proteobacteria | Ralstonia solanacearum (bacterial wilt of potato) | Present | | | EPPO, 2014; CABI/EPPO, 1999 |
| Bacteria | | Proteobacteria | Ralstonia solanacearum race 1 (bacterial wilt of solanaceous crops) | Present | | | CABI & EPPO, 1999 |
| Bacteria | | Proteobacteria | Xanthomonas axonopodis pv. manihotis (cassava bacterial blight) | Present | | | Tominaga et al., 1978; IMI, 1993; EPPO, 2014 |
| Bacteria | | Proteobacteria | Xanthomonas oryzae pv. oryzicola (bacterial leaf streak of rice) | Present | | | EPPO, 2014; CABI/EPPO, 2015 |
| Eukaryota | Fungi | Ascomycota | Fusarium oxysporum f.sp. cubense (Panama disease of banana) | Present | | | CABI/EPPO, 2015 |
| Eukaryota | Fungi | Basidiomycota | Phakopsora pachyrhizi (soyabean rust) | Present | | | EPPO, 2014; CABI/EPPO, 2015 |
| Eukaryota | Fungi | Basidiomycota | Puccinia kuehnii (orange rust) | Present | | | EPPO, 2014; CABI/EPPO, 2015 |
| Eukaryota | Metazoa | Arthropoda | Agrotis ipsilon (black cutworm) | Present | | | Franssen, 1935; Voute, 1937 |
| Eukaryota | Metazoa | Arthropoda | Aleurocanthus woglumi (citrus blackfly) | Present | | | EPPO, 2014; Mound & Halsey, 1978; CIE, 1995 |
| Eukaryota | Metazoa | Arthropoda | Aleurodicus destructor (coconut whitefly) | Present | | | Mound & Halsey, 1978; Martin, 1985; Martin, 1988; EPPO, 2014 |
| Eukaryota | Metazoa | Arthropoda | Anoplolepis gracilipes (yellow crazy ant) | Present | Introduced | Yes | ISSG, 2011 |
| Eukaryota | Metazoa | Arthropoda | Aphis spiraecola (Spirea aphid) | Present | Introduced | Yes | CABI/EPPO, 2001; NHM |
| Eukaryota | Metazoa | Arthropoda | Aulacaspis yasumatsui (cycad aulacaspis scale) | Present | | | Watson et al., 2014 |
| Eukaryota | Metazoa | Arthropoda | Bactrocera cucurbitae (melon fly) | Present | | Yes | Drew, 1982; CABI/EPPO, 2003; EPPO, 2014 |
| Eukaryota | Metazoa | Arthropoda | Bactrocera dorsalis (Oriental fruit fly) | Present | Native | | Drew & Hancock, 1994; EPPO, 2014 |
| Eukaryota | Metazoa | Arthropoda | Bemisia tabaci (tobacco whitefly) | Restricted distribution | | | CAB European, 1998; EPPO, 2014 |
| Eukaryota | Metazoa | Arthropoda | Brontispa longissima (coconut hispine beetle) | Present | | | Woodroof, 1979; Kalshoven & Laan, 1981; EPPO, 2014; van der Goot, 1935; CABI/EPPO, 1998 |
| Eukaryota | Metazoa | Arthropoda | Chilo suppressalis (striped rice stem borer) | Present | Native | Yes | CIE, 1977; EPPO, 2014 |
| Eukaryota | Metazoa | Arthropoda | Chrysomphalus aonidum (circular scale) | Present | | | CIE, 1988; EPPO, 2014 |
| Eukaryota | Metazoa | Arthropoda | Chrysomya bezziana (Old World screw-worm) | Present | Native | Yes | Wardhana et al., 2012b; Norris & Murray, 1964; Wardhana et al., 2014 |
| Eukaryota | Metazoa | Arthropoda | Conopomorpha cramerella (cocoa pod borer) | Present | | | Kalshoven & LGE, Laan PA van der (Reviser translator; Waterhouse, 1993; CIE, 1984; EPPO, 2014 |
| Eukaryota | Metazoa | Arthropoda | Coptotermes (termites) | Present | | | Pearce, 1987 |
| Eukaryota | Metazoa | Arthropoda | Coptotermes curvignathus (rubber termite) | Present | Native | | Kalshoven, 1963 |
| Eukaryota | Metazoa | Arthropoda | Culex quinquefasciatus (southern house mosquito) | Widespread | | Yes | Sunahara et al., 1998 |
| Eukaryota | Metazoa | Arthropoda | Diaphorina citri (Asian citrus psyllid) | Absent, unreliable record | | | EPPO, 2014 |
| Eukaryota | Metazoa | Arthropoda | Erionota thrax (banana skipper) | Widespread | | | Evans, 1949; Kalshoven, 1951; Maruyama, 1991; Vane-Wright & de Jong, 2003 |
| Eukaryota | Metazoa | Arthropoda | Euwallacea destruens | Present | Native | | Schedl, 1969 |
| Eukaryota | Metazoa | Arthropoda | Ferrisia virgata (striped mealybug) | Present | | | Williams, 2004 |
| Eukaryota | Metazoa | Arthropoda | Helicoverpa armigera (cotton bollworm) | Present | | | IIE, 1993; EPPO, 2014 |
| Eukaryota | Metazoa | Arthropoda | Hypothenemus hampei (coffee berry borer) | Present | | | CABI/EPPO, 2005; EPPO, 2014 |
| Eukaryota | Metazoa | Arthropoda | Icerya purchasi (cottony cushion scale) | Present | Introduced | Yes | CIE, 1971; EPPO, 2014 |
| Eukaryota | Metazoa | Arthropoda | Liriomyza huidobrensis (serpentine leafminer) | Present | | | CABI/EPPO, 2002; EPPO, 2014 |
| Eukaryota | Metazoa | Arthropoda | Maconellicoccus hirsutus (pink hibiscus mealybug) | Present | | | EPPO, 2014; CABI/EPPO, 2015 |
| Eukaryota | Metazoa | Arthropoda | Nezara viridula (green stink bug) | Widespread | | | Van Halteren, 1979; CABI/EPPO, 1998 |
| Eukaryota | Metazoa | Arthropoda | Oryctes rhinoceros (coconut rhinoceros beetle) | Present | | | Zelazny et al., 1992; EPPO, 2014; CABI/EPPO, 1998 |
| Eukaryota | Metazoa | Arthropoda | Paracoccus marginatus (papaya mealybug) | Present | | | CABI/EPPO, 2012 |
| Eukaryota | Metazoa | Arthropoda | Phthorimaea operculella (potato tuber moth) | Present | | | Kalshoven & van der Laan, 1981; Waterhouse, 1993; CABI/EPPO, 2012; EPPO, 2014 |
| Eukaryota | Metazoa | Arthropoda | Phyllocnistis citrella (citrus leaf miner) | Present | | | Kalshoven & van der Laan, 1981; Waterhouse, 1993; CABI/EPPO, 2003; EPPO, 2014; IIE, 1995 |
| Eukaryota | Metazoa | Arthropoda | Planococcus citri (citrus mealybug) | Present | | | Le Pelley, 1968; CABI/EPPO, 1999 |
| Eukaryota | Metazoa | Arthropoda | Plutella xylostella (diamondback moth) | Widespread | | | Sastrosiswojo & Sastrodihardjo, 1986 |
| Eukaryota | Metazoa | Arthropoda | Rhynchophorus ferrugineus (red palm weevil) | Present | | | CABI/EPPO, 2010; EPPO, 2014 |
| Eukaryota | Metazoa | Arthropoda | Scirtothrips dorsalis (chilli thrips) | Present | | | EPPO, 2014; CABI/EPPO, 2010 |
| Eukaryota | Metazoa | Arthropoda | Solenopsis geminata (tropical fire ant) | Present | | | EPPO, 2014 |
| Eukaryota | Metazoa | Arthropoda | Spodoptera exempta (black armyworm) | Present | | | EPPO, 2014; Waterhouse, 1991 |
| Eukaryota | Metazoa | Arthropoda | Spodoptera litura (taro caterpillar) | Present | | | EPPO, 2014 |
| Eukaryota | Metazoa | Arthropoda | Toxoptera citricida (black citrus aphid) | Present | | | CABI/EPPO, 1998; EPPO, 2014 |
| Eukaryota | Metazoa | Arthropoda | Trialeurodes vaporariorum (whitefly, greenhouse) | Present | | | Nasruddin & Mound, 2016 |
| Eukaryota | Metazoa | Arthropoda | Vespa velutina (Asian Hornet) | Present | Native | | EPPO, 2007; Archer, 2012 |
| Eukaryota | Metazoa | Arthropoda | Xyleborus perforans (island pinhole borer) | Present | Native | | UK CAB International, 1973; Wood & Bright, 1992 |
| Eukaryota | Metazoa | Arthropoda | Xyleborus similis | Present | Native | | Wood & Bright, 1992 |
| Eukaryota | Metazoa | Arthropoda | Xyleborus volvulus | Present | Introduced | Yes | Wood & Bright, 1992 |
| Eukaryota | Metazoa | Arthropoda | Xylosandrus compactus (shot-hole borer) | Present | Native | | CABI/EPPO &, 1997; EPPO, 2013 |
| Eukaryota | Metazoa | Arthropoda | Xylosandrus crassiusculus (Asian ambrosia beetle) | Present | Native | | Kalshoven, 1959; CABI/EPPO, 2009; EPPO, 2014 |
| Eukaryota | Metazoa | Arthropoda | Xylosandrus morigerus (brown twig beetle) | Present | | | EPPO, 2014 |
| Eukaryota | Metazoa | Chordata | Bubalus bubalis (Asian water buffalo) | Present only in captivity/cultivation | | | Borghese, 2005 |
| Eukaryota | Metazoa | Chordata | Columba livia (pigeons) | Present | Native | | ISSG, 2011 |
| Eukaryota | Metazoa | Chordata | Trachemys scripta elegans (red-eared slider) | Present | Introduced | | ISSG, 2011 |
| Eukaryota | Metazoa | Echinodermata | Acanthaster planci (crown-of-thorns starfish) | Present | | | ISSG, 2011 |
| Eukaryota | Metazoa | Mollusca | Melanoides tuberculata (red-rimmed melania) | Widespread | Native | | Jickeli, 1874 |
| Eukaryota | Metazoa | Mollusca | Pomacea canaliculata (golden apple snail) | Widespread | Introduced | Yes | Hendarsih-Suharto, et al., 2006; EPPO, 2014 |
| Eukaryota | Metazoa | Nematoda | Meloidogyne javanica (sugarcane eelworm) | Present | | | CABI/EPPO, 2002 |
| Eukaryota | Plantae | Chlorophyta | Ulva pertusa | Present | Native | | Weber Bosse Avan, 1913 |
| Eukaryota | Plantae | Pteridophyta | Deparia petersenii subsp. petersenii (Petersen’s lady fern) | Present | Native | | Kato, 1984 |
| Eukaryota | Plantae | Pteridophyta | Lygodium japonicum (Japanese climbing fern) | Present | Native | | Maideen et al., 2004; Holttum, 1959 |
| Eukaryota | Plantae | Pteridophyta | Nephrolepis brownii (Asian swordfern) | Present | | | GBIF, 2013 |
| Eukaryota | Plantae | Rhodophyta | Acanthophora spicifera | Present | Native | | Verheij & Prud'homme, 1993 |
| Eukaryota | Plantae | Rhodophyta | Gracilaria salicornia | Present | Native | | Verheij & Prud'homme, 1993 |
| Eukaryota | Plantae | Spermatophyta | Abutilon indicum (country mallow) | Present | Native | | PROTA, 2015 |
| Eukaryota | Plantae | Spermatophyta | Acacia auriculiformis (northern black wattle) | Present | Introduced | | |
| Eukaryota | Plantae | Spermatophyta | Acacia decurrens (green wattle) | Present | Introduced | | |
| Eukaryota | Plantae | Spermatophyta | Acacia longifolia (golden wattle) | Present | Introduced | | Missouri Botanical Garden, 2015 |
| Eukaryota | Plantae | Spermatophyta | Acacia mearnsii (black wattle) | Present | Introduced | | CABI, 2005 |
| Eukaryota | Plantae | Spermatophyta | Adenanthera pavonina (red-bead tree) | Present | Native | | ILDIS, 2002 |
| Eukaryota | Plantae | Spermatophyta | Ageratum conyzoides (billy goat weed) | Present | Introduced | | PROTA, 2016 |
| Eukaryota | Plantae | Spermatophyta | Albizia procera (white siris) | Present | Native | | ILDIS, 2002 |
| Eukaryota | Plantae | Spermatophyta | Aleurites moluccanus (candlenut tree) | Present | Native | | Govaerts, 2014; Govaerts, 2014 |
| Eukaryota | Plantae | Spermatophyta | Alocasia macrorrhizos (giant taro) | Present | Introduced | | Govaerts, 2012 |
| Eukaryota | Plantae | Spermatophyta | Artocarpus altilis (breadfruit) | Present | | | |
| Eukaryota | Plantae | Spermatophyta | Barringtonia asiatica (sea poison tree) | Present | Native | | Govaerts & Tulig, 2014 |
| Eukaryota | Plantae | Spermatophyta | Brachypodium sylvaticum (slender false brome) | Present, few occurrences | Native | | Veldkamp & Vanscheindelen, 1989 |
| Eukaryota | Plantae | Spermatophyta | Caesalpinia decapetala (Mysore thorn) | Present | Native | | ILDIS, 2014 |
| Eukaryota | Plantae | Spermatophyta | Calliandra houstoniana var. calothyrsus (calliandra) | Present | | | |
| Eukaryota | Plantae | Spermatophyta | Cassia javanica (pink shower) | Present | Native | | ILDIS, 2014 |
| Eukaryota | Plantae | Spermatophyta | Cassytha filiformis (love-vine) | Present | Native | | GBIF, 2014 |
| Eukaryota | Plantae | Spermatophyta | Ceratophyllum demersum (coontail) | Widespread | | | Vaas, 1956 |
| Eukaryota | Plantae | Spermatophyta | Chromolaena odorata (Siam weed) | Widespread | Introduced | Yes | Gautier, 1992b |
| Eukaryota | Plantae | Spermatophyta | Clerodendrum indicum (Turk's turban) | Present | | | Wearn & Mabberley, 2011 |
| Eukaryota | Plantae | Spermatophyta | Cocos nucifera (coconut) | Present | | | Govaerts et al., 2014 |
| Eukaryota | Plantae | Spermatophyta | Colocasia esculenta (taro) | Present | | | Govaerts, 2012 |
| Eukaryota | Plantae | Spermatophyta | Crassocephalum crepidioides (redflower ragleaf) | Present | | | Tjitrosoedirdjo, 1987 |
| Eukaryota | Plantae | Spermatophyta | Cyperus difformis (small-flowered nutsedge) | Present | Native | | Govaerts, 2014 |
| Eukaryota | Plantae | Spermatophyta | Cyperus imbricatus (shingle flatsedge) | Present | Native | | Govaerts, 2013 |
| Eukaryota | Plantae | Spermatophyta | Cyperus rotundus (purple nutsedge) | Present | Native | | Govaerts, 2014 |
| Eukaryota | Plantae | Spermatophyta | Dichanthium annulatum (Kleberg's bluestem) | Present | Native | | Clayton et al., 2014 |
| Eukaryota | Plantae | Spermatophyta | Dioscorea alata (white yam) | Present | Native | | Govaerts, 2013 |
| Eukaryota | Plantae | Spermatophyta | Echinochloa colona (junglerice) | Present | | | Clayton et al., 2014 |
| Eukaryota | Plantae | Spermatophyta | Eichhornia crassipes (water hyacinth) | Widespread | Introduced | Yes | Gopal, 1987 |
| Eukaryota | Plantae | Spermatophyta | Epipremnum pinnatum (centipede tongavine) | Present | Native | | Govaerts, 2012 |
| Eukaryota | Plantae | Spermatophyta | Erechtites valerianifolius (tropical burnweed) | Present | Introduced | Yes | Belcher, 1956 |
| Eukaryota | Plantae | Spermatophyta | Etlingera elatior (torch ginger) | Present | Introduced | | Govaerts, 2014 |
| Eukaryota | Plantae | Spermatophyta | Ficus benjamina (weeping fig) | Present | | | |
| Eukaryota | Plantae | Spermatophyta | Fimbristylis littoralis (lesser fimbristylis) | Present | Native | | Govaerts, 2014 |
| Eukaryota | Plantae | Spermatophyta | Gliricidia sepium (mother of cocoa) | Present | Introduced | | |
| Eukaryota | Plantae | Spermatophyta | Hibiscus tiliaceus (coast cottonwood) | Present | | | |
| Eukaryota | Plantae | Spermatophyta | Imperata cylindrica (cogon grass) | Widespread | Native | Yes | Kostermans et al., 1987 |
| Eukaryota | Plantae | Spermatophyta | Lantana camara (lantana) | Widespread | Introduced | Yes | Whitten et al., 2002 |
| Eukaryota | Plantae | Spermatophyta | Leonurus japonicus (honeyweed) | Present | Native | | Govaerts, 2014 |
| Eukaryota | Plantae | Spermatophyta | Leucaena diversifolia | Present | Introduced | | |
| Eukaryota | Plantae | Spermatophyta | Leucaena leucocephala (leucaena) | Present | Introduced | | CABI, 2005 |
| Eukaryota | Plantae | Spermatophyta | Ludwigia hyssopifolia (water primrose) | Present | | | Raven, 1963 |
| Eukaryota | Plantae | Spermatophyta | Ludwigia octovalvis (primrose willow) | Present | | | Raven, 1963 |
| Eukaryota | Plantae | Spermatophyta | Macaranga tanarius (parasol leaf tree) | Present | Native | | Airy Shaw, 1982 |
| Eukaryota | Plantae | Spermatophyta | Mangifera indica (mango) | Present | Introduced | | PROTA, 2014 |
| Eukaryota | Plantae | Spermatophyta | Merremia peltata | Present | | | Van & Hoogland, 1953 |
| Eukaryota | Plantae | Spermatophyta | Merremia umbellata (hogvine) | Present | | | Van & Ooststroom Hoogland, 1953 |
| Eukaryota | Plantae | Spermatophyta | Mimosa diplotricha (giant sensitive plant) | Present | Introduced | | Soerjani et al., 1987 |
| Eukaryota | Plantae | Spermatophyta | Mimosa pudica (sensitive plant) | Present | Introduced | | Kostermans et al., 1987 |
| Eukaryota | Plantae | Spermatophyta | Morus nigra (black mulberry) | Present | | | |
| Eukaryota | Plantae | Spermatophyta | Neyraudia reynaudiana (burma reed) | Present | Native | | GrassWorld, 2015 |
| Eukaryota | Plantae | Spermatophyta | Ocimum tenuiflorum (holy basil) | Present | Native | | Govaerts, 2014 |
| Eukaryota | Plantae | Spermatophyta | Oryza rufipogon (wild rice) | Present | | | Chang, 1975 |
| Eukaryota | Plantae | Spermatophyta | Paederia foetida (skunkvine) | Localised | Native | | Puff, 1991 |
| Eukaryota | Plantae | Spermatophyta | Panicum repens (torpedo grass) | Present | Introduced | | Soerjani et al., 1987 |
| Eukaryota | Plantae | Spermatophyta | Peltophorum pterocarpum (copperpod) | Present | | | |
| Eukaryota | Plantae | Spermatophyta | Phaius tankervilleae (nun’s-hood orchid) | Present | Native | | eMonocot, 2015 |
| Eukaryota | Plantae | Spermatophyta | Phyllanthus urinaria (leafflower) | Widespread | Native | Yes | Soerjani et al., 1987; Moody, 1989 |
| Eukaryota | Plantae | Spermatophyta | Piper aduncum (spiked pepper) | Widespread | Introduced | Yes | Hartemink, 2006 |
| Eukaryota | Plantae | Spermatophyta | Pithecellobium dulce (Manila tamarind) | Present | Introduced | | |
| Eukaryota | Plantae | Spermatophyta | Plectranthus scutellarioides (coleus) | Present | Native | | Govaerts, 2014 |
| Eukaryota | Plantae | Spermatophyta | Polygonum nepalense (Nepal persicaria) | Present | | | Everaarts, 1981 |
| Eukaryota | Plantae | Spermatophyta | Psidium guajava (guava) | Present | Introduced | | Govaerts, 2013 |
| Eukaryota | Plantae | Spermatophyta | Ricinus communis (castor bean) | Present | Introduced | | Govaerts, 2014 |
| Eukaryota | Plantae | Spermatophyta | Samanea saman (rain tree) | Present | Introduced | | |
| Eukaryota | Plantae | Spermatophyta | Senna bacillaris (whitebark senna) | Present | | | ILDIS, 2014 |
| Eukaryota | Plantae | Spermatophyta | Senna septemtrionalis (smooth senna) | Present | | | ILDIS, 2014 |
| Eukaryota | Plantae | Spermatophyta | Senna siamea (yellow cassia) | Present | Native | | ILDIS, 2007 |
| Eukaryota | Plantae | Spermatophyta | Setaria verticillata (bristly foxtail) | Present | | | Missouri Botanical Garden, 2008 |
| Eukaryota | Plantae | Spermatophyta | Spathodea campanulata (African tulip tree) | Present | | | CABI, 2005 |
| Eukaryota | Plantae | Spermatophyta | Spathoglottis plicata (Philippine ground orchid) | Present | Native | | Govaerts, 2012 |
| Eukaryota | Plantae | Spermatophyta | Striga asiatica (witch weed) | Present | Native | | Kostermans et al., 1987 |
| Eukaryota | Plantae | Spermatophyta | Tephrosia candida (white tephrosia) | Present | Native | | ILDIS, 2013 |
| Eukaryota | Plantae | Spermatophyta | Terminalia catappa (Singapore almond) | Present | | | |
| Eukaryota | Plantae | Spermatophyta | Themeda arguens (Christmas grass) | Present | Native | | Clayton et al., 2014 |
| Eukaryota | Plantae | Spermatophyta | Toona ciliata (toon) | Present | | | |
| Eukaryota | Plantae | Spermatophyta | Urochloa mutica (para grass) | Present | Introduced | | Clayton et al., 2014 |
| Eukaryota | Plantae | Spermatophyta | Vigna marina (beach bean) | Widespread | Native | | ILDIS, 2014 |
| Eukaryota | Plantae | Spermatophyta | Xyris complanata (yellow-eyed grass) | Present | Native | | eBotany, 2015 |
| Virus | | | Sugarcane mosaic virus (mosaic of abaca) | Present | | | Wakman et al., 2001 |